PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G021800.2
Common NameB456_006G021800, LOC105798229
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 93aa    MW: 10412.8 Da    PI: 8.5214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G021800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.3e-0823591854
                        HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        +  ++Lr+llP+ +   +s K+s + +L+++++YI+sL
  Gorai.006G021800.2 23 ELVSKLRQLLPEiR-DRRSDKVSASKVLQETCNYIRSL 59
                        56689*******76.99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.302559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-82075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-92178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-52359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRQST AGVSRISDDQ IIELVSKLRQ LLPEIRDRRS DKVSASKVLQ ETCNYIRSLH  60
REVDDLSERL SQLLATIDAD SAEAAIIRSL IM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483673.12e-57PREDICTED: transcription factor PRE5-like
SwissprotQ9LJX11e-43PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0B0MSC83e-57A0A0B0MSC8_G
TrEMBLA0A0D2Q2103e-57A0A0D2Q210_G
STRINGGLYMA13G05280.11e-48(Glycine max)
STRINGGLYMA19G02510.11e-48(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.16e-45bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]